Status
[June 2018] Genome sequencing and assembly of Psilocybe serbica was carried out by the Department of Pharmaceutical Microbiology at the Friedrich-Schiller-University Jena, Germany and annotated using the JGI fungal annotation pipeline. The sequenced isolate was collected in the Upper Lusatia area, Germany.
Summary statistics for the Psilocybe serbica v1.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 61.29 |
| Sequencing read coverage depth | 1.0x |
| # of contigs | 217 |
| # of scaffolds | 217 |
| # of scaffolds >= 2Kbp | 217 |
| Scaffold N50 | 9 |
| Scaffold L50 (Mbp) | 2.01 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 5.96, 5.50, 4.43 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1718 | 1434 |
| transcript | 1319 | 1080 |
| exon | 209 | 128 |
| intron | 77 | 59 |
| description: | ||
| protein length (aa) | 440 | 360 |
| exons per gene | 6.30 | 5 |
| # of gene models | 15481 |
Collaborators
Dirk Hoffmeister, Hans Knöll Institute, Germany
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Fricke J, Blei F, Hoffmeister D
Enzymatic Synthesis of Psilocybin.
Angew Chem Int Ed Engl. 2017 Sep 25;56(40):12352-12355. doi: 10.1002/anie.201705489
Fricke J, Blei F, Hoffmeister D
Enzymatic Synthesis of Psilocybin.
Angew Chem Int Ed Engl. 2017 Sep 25;56(40):12352-12355. doi: 10.1002/anie.201705489
Funding
This project was not sequenced at the JGI.
