Info • Puccinia coronata avenae 12SD80


The genome sequence and gene models of Puccinia coronata avenae 12SD80 were not determined by the Joint Genome Institute (JGI), but were provided by the Figueroa lab on August 4th, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by the Figueroa lab and is therefore not automatically updated.

If you use this genome in your research, please cite:

Miller, M. E., Zhang, Y., Omidvar, V., Sperschneider, J., Schwessinger, B., Raley, C., Palmer, J. M., Garnica, D., Upadhyayah, N., Rathjen, J., Taylor, J. M., Park, R. F., Dodds, P. N., Hirsch, C. D., Kianian, S. F. and Figueroa, M. 2017. De novo assembly and phasing of dikaryotic genomes from two isolates of Puccinia coronata f. sp. avenae, the causal agent of oat crown rust. BioRxiv.

Summary statistics for the Puccinia coronata-avenae 12SD80 release are below.
Genome Assembly
Genome Assembly size (Mbp) 150.47
Sequencing read coverage depth
# of contigs 1636
# of scaffolds 1636
# of scaffolds >= 2Kbp 1632
Scaffold N50 241
Scaffold L50 (Mbp) 0.16
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.39, 0.93, 0.85

Gene Models ExternalModels
length (bp) of: average median
gene 1541 1175
transcript 1135 831
exon 258 147
intron 121 89
protein length (aa) 378 277
exons per gene 4.41 3
# of gene models 26323


Melania Figueroa, University of Minnesota

Genome Reference(s)


This project was not sequenced at the JGI.