Info • Puccinia striiformis f. sp. tritici PST-130

Status

This genome was sequenced by Dario Cantu (dacantu@ucdavis.edu), Jorge Dubcovsky et al in Department of Plant Sciences, University of California Davis, Davis, California, United States of America (Next Generation Sequencing Provides Rapid Access to the Genome of Puccinia striiformis f. sp. tritici, the Causal Agent of Wheat Stripe Rust).

Summary statistics for the Puccinia striiformis f. sp. tritici PST-130 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 64.78
Sequencing read coverage depth >50x
# of contigs 29178
# of scaffolds 29178
# of scaffolds >= 2Kbp 8682
Scaffold N50 3341
Scaffold L50 (Mbp) 0.01
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.05, 0.04, 0.04


Gene Models ExternalModels
length (bp) of: average median
gene 1270 954
transcript 963 693
exon 252 145
intron 111 83
description:
protein length (aa) 321 231
exons per gene 3.82 3
# of gene models 18021


Genome Reference(s)

Funding

This project was not sequenced at the JGI.