Status
This genome was sequenced by Dario Cantu ([email protected]), Jorge Dubcovsky et al in Department of Plant Sciences, University of California Davis, Davis, California, United States of America (Next Generation Sequencing Provides Rapid Access to the Genome of Puccinia striiformis f. sp. tritici, the Causal Agent of Wheat Stripe Rust).
Summary statistics for the Puccinia striiformis f. sp.
tritici PST-130 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 64.78 |
| Sequencing read coverage depth | >50x |
| # of contigs | 29178 |
| # of scaffolds | 29178 |
| # of scaffolds >= 2Kbp | 8682 |
| Scaffold N50 | 3341 |
| Scaffold L50 (Mbp) | 0.01 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.05, 0.04, 0.04 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1270 | 954 |
| transcript | 963 | 693 |
| exon | 252 | 145 |
| intron | 111 | 83 |
| description: | ||
| protein length (aa) | 321 | 231 |
| exons per gene | 3.82 | 3 |
| # of gene models | 18021 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Cantu D, Govindarajulu M, Kozik A, Wang M, Chen X, Kojima KK, Jurka J, Michelmore RW, Dubcovsky J
Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust.
PLoS One. 2011;6(8):e24230. doi: 10.1371/journal.pone.0024230
Cantu D, Govindarajulu M, Kozik A, Wang M, Chen X, Kojima KK, Jurka J, Michelmore RW, Dubcovsky J
Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust.
PLoS One. 2011;6(8):e24230. doi: 10.1371/journal.pone.0024230
Funding
This project was not sequenced at the JGI.
