Status
The genome sequence and gene models of Puccinia striiformis f. sp. tritici 104 E137 A- were not determined by the Joint Genome Institute (JGI), but were provided by Benjamin Schwessinger on Sept 11th, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by Benjamin Schwessinger and is therefore not automatically updated.
If you use this genome in your research, please cite:
Schwessinger et al., 2017. A near complete haplotype-phased genome of the dikaryotic wheat stripe rust fungus Puccinia striiformis f. sp. tritici reveals high inter-haplome diversity. BioRxiv. doi: https://doi.org/10.1101/192435
| Genome Assembly | |
| Genome Assembly size (Mbp) | 156.83 |
| Sequencing read coverage depth | |
| # of contigs | 631 |
| # of scaffolds | 631 |
| # of scaffolds >= 2Kbp | 631 |
| Scaffold N50 | 57 |
| Scaffold L50 (Mbp) | 0.74 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 3.07, 2.86, 2.39 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1539 | 1196 |
| transcript | 1179 | 912 |
| exon | 267 | 141 |
| intron | 107 | 84 |
| description: | ||
| protein length (aa) | 393 | 304 |
| exons per gene | 4.42 | 3 |
| # of gene models | 30249 |
Collaborators
Benjamin
Schwessinger, Australia National University, College of
Science
Genome Reference(s)
Schwessinger B, Sperschneider J, Cuddy WS, Garnica DP, Miller ME, Taylor JM, Dodds PN, Figueroa M, Park RF, Rathjen JP
A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity.
mBio. 2018 Feb 20;9(1):. doi: 10.1128/mBio.02275-17
