Status
This genome was sequenced by the Broad Institute. Please check their data use policies.
Summary statistics for the Puccinia triticina 1-1 BBBD
Race 1 v1.0 release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 135.34 |
Sequencing read coverage depth | 31x |
# of contigs | 23148 |
# of scaffolds | 14820 |
# of scaffolds >= 2Kbp | 3111 |
Scaffold N50 | 68 |
Scaffold L50 (Mbp) | 0.54 |
# of gaps | 8328 |
% of scaffold length in gaps | 21.2% |
Three largest Scaffolds (Mbp) | 3.06, 2.79, 2.67 |
Gene Models | BroadModels | |
length (bp) of: | average | median |
gene | 1781 | 1482 |
transcript | 1449 | 1188 |
exon | 316 | 195 |
intron | 95 | 82 |
description: | ||
protein length (aa) | 398 | 312 |
exons per gene | 4.59 | 4 |
# of gene models | 15685 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Cuomo CA, Bakkeren G, Khalil HB, Panwar V, Joly D, Linning R, Sakthikumar S, Song X, Adiconis X, Fan L, Goldberg JM, Levin JZ, Young S, Zeng Q, Anikster Y, Bruce M, Wang M, Yin C, McCallum B, Szabo LJ, Hulbert S, Chen X, Fellers JP
Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci.
G3 (Bethesda). 2017 Feb 9;7(2):361-376. doi: 10.1534/g3.116.032797
Cuomo CA, Bakkeren G, Khalil HB, Panwar V, Joly D, Linning R, Sakthikumar S, Song X, Adiconis X, Fan L, Goldberg JM, Levin JZ, Young S, Zeng Q, Anikster Y, Bruce M, Wang M, Yin C, McCallum B, Szabo LJ, Hulbert S, Chen X, Fellers JP
Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci.
G3 (Bethesda). 2017 Feb 9;7(2):361-376. doi: 10.1534/g3.116.032797
Funding
This project was not sequenced at the JGI.