Info • Puccinia triticina 1-1 BBBD Race 1

Status

This genome was sequenced by the Broad Institute. Please check their data use policies.

Summary statistics for the Puccinia triticina 1-1 BBBD Race 1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 135.34
Sequencing read coverage depth 31x
# of contigs 23148
# of scaffolds 14820
# of scaffolds >= 2Kbp 3111
Scaffold N50 68
Scaffold L50 (Mbp) 0.54
# of gaps 8328
% of scaffold length in gaps 21.2%
Three largest Scaffolds (Mbp) 3.06, 2.79, 2.67


Gene Models BroadModels
length (bp) of: average median
gene 1781 1482
transcript 1449 1188
exon 316 195
intron 95 82
description:
protein length (aa) 398 312
exons per gene 4.59 4
# of gene models 15685


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Cuomo CA, Bakkeren G, Khalil HB, Panwar V, Joly D, Linning R, Sakthikumar S, Song X, Adiconis X, Fan L, Goldberg JM, Levin JZ, Young S, Zeng Q, Anikster Y, Bruce M, Wang M, Yin C, McCallum B, Szabo LJ, Hulbert S, Chen X, Fellers JP
Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci.
G3 (Bethesda). 2017 Feb 9;7(2):361-376. doi: 10.1534/g3.116.032797

Funding

This project was not sequenced at the JGI.