Info • Pycnoporus cinnabarinus CIRM-BRFM 137 v1.0

Status

This genome was sequenced by INRA - Aix Marseille Université. Please check their data use policies. 

Summary statistics for the Pycnoporus cinnabarinus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.67
Sequencing read coverage depth
# of contigs 2036
# of scaffolds 784
# of scaffolds >= 2Kbp 529
Scaffold N50 54
Scaffold L50 (Mbp) 0.17
# of gaps 1252
% of scaffold length in gaps 1.5%
Three largest Scaffolds (Mbp) 0.90, 0.79, 0.56


Gene Models ExternalModels
length (bp) of: average median
gene 1835 1514
transcript 1458 1182
exon 248 149
intron 79 59
description:
protein length (aa) 486 394
exons per gene 5.87 5
# of gene models 10442


Collaborators



 

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Levasseur A, Lomascolo A, Chabrol O, Ruiz-Dueñas FJ, Boukhris-Uzan E, Piumi F, Kües U, Ram AF, Murat C, Haon M, Benoit I, Arfi Y, Chevret D, Drula E, Kwon MJ, Gouret P, Lesage-Meessen L, Lombard V, Mariette J, Noirot C, Park J, Patyshakuliyeva A, Sigoillot JC, Wiebenga A, Wösten HA, Martin F, Coutinho PM, de Vries RP, Martínez AT, Klopp C, Pontarotti P, Henrissat B, Record E
The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown.
BMC Genomics. 2014 Jun 18;15():486. doi: 10.1186/1471-2164-15-486

Funding

This project was not sequenced at the JGI.