Status
Pyrenophora tritici-repentis was sequenced by the Broad Institute of MIT and Harvard as part of their Fungal Genome Initiative. For more information on the project please see Pyrenophora tritici-repentis at Broad Institute. JGI Eukaryotic tools were setup to assist with manual curation and comparative analysis of Dothidiomycetes genomes.
The Pyrenophora tritici-repentis assembly is 37.84 million bases in size and has 12,141 predicted gene models.
Collaborators
- Dr. Lynda Ciuffetti, Oregon State University
- Fungal Genome Initiative, Broad Institute
- Dothidiomycete Consortium
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Manning VA, Pandelova I, Dhillon B, Wilhelm LJ, Goodwin SB, Berlin AM, Figueroa M, Freitag M, Hane JK, Henrissat B, Holman WH, Kodira CD, Martin J, Oliver RP, Robbertse B, Schackwitz W, Schwartz DC, Spatafora JW, Turgeon BG, Yandava C, Young S, Zhou S, Zeng Q, Grigoriev IV, Ma LJ, Ciuffetti LM
Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence.
G3 (Bethesda). 2013 Jan;3(1):41-63. doi: 10.1534/g3.112.004044
Manning VA, Pandelova I, Dhillon B, Wilhelm LJ, Goodwin SB, Berlin AM, Figueroa M, Freitag M, Hane JK, Henrissat B, Holman WH, Kodira CD, Martin J, Oliver RP, Robbertse B, Schackwitz W, Schwartz DC, Spatafora JW, Turgeon BG, Yandava C, Young S, Zhou S, Zeng Q, Grigoriev IV, Ma LJ, Ciuffetti LM
Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence.
G3 (Bethesda). 2013 Jan;3(1):41-63. doi: 10.1534/g3.112.004044
Funding
This project was not sequenced at the JGI.
