Status
The Pyropia yezoensis U-51 genome sequence and gene models have not been determined by the JGI, but were downloaded from Nakamura et al. 2013 on September 19, 2019. Please note that this copy of the genome is not maintained by Nakamura et al. and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Summary statistics for the Pyropia yezoensis U-51 release
are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 43.48 |
Sequencing read coverage depth | |
# of contigs | 49540 |
# of scaffolds | 46634 |
# of scaffolds >= 2Kbp | 5136 |
Scaffold N50 | 6445 |
Scaffold L50 (Mbp) | 0.00 |
# of gaps | 2906 |
% of scaffold length in gaps | 0.5% |
Three largest Scaffolds (Mbp) | 0.02, 0.02, 0.02 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 956 | 698 |
transcript | 852 | 615 |
exon | 635 | 435 |
intron | 306 | 256 |
description: | ||
protein length (aa) | 284 | 205 |
exons per gene | 1.34 | 1 |
# of gene models | 10327 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Nakamura Y, Sasaki N, Kobayashi M, Ojima N, Yasuike M, Shigenobu Y, Satomi M, Fukuma Y, Shiwaku K, Tsujimoto A, Kobayashi T, Nakayama I, Ito F, Nakajima K, Sano M, Wada T, Kuhara S, Inouye K, Gojobori T, Ikeo K
The first symbiont-free genome sequence of marine red alga, Susabi-nori (Pyropia yezoensis).
PLoS One. 2013;8(3):e57122. doi: 10.1371/journal.pone.0057122
Nakamura Y, Sasaki N, Kobayashi M, Ojima N, Yasuike M, Shigenobu Y, Satomi M, Fukuma Y, Shiwaku K, Tsujimoto A, Kobayashi T, Nakayama I, Ito F, Nakajima K, Sano M, Wada T, Kuhara S, Inouye K, Gojobori T, Ikeo K
The first symbiont-free genome sequence of marine red alga, Susabi-nori (Pyropia yezoensis).
PLoS One. 2013;8(3):e57122. doi: 10.1371/journal.pone.0057122
Links
- JGI Algae EcoGroup Portal
- JGI PhyloGroup Portals: Archaeplastida Rhodophyta Bangiophyceae
Funding
This project was not sequenced at the JGI.