Info • Pyropia yezoensis U-51
Please note that this organism is for archival use only. Please see the current Neopyropia yezoensis U-51 site for the latest data and information.

Status

The Pyropia yezoensis U-51 genome sequence and gene models have not been determined by the JGI, but were downloaded from Nakamura et al. 2013 on September 19, 2019. Please note that this copy of the genome is not maintained by Nakamura et al. and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Pyropia yezoensis U-51 release are below.
Genome Assembly
Genome Assembly size (Mbp) 43.48
Sequencing read coverage depth
# of contigs 49540
# of scaffolds 46634
# of scaffolds >= 2Kbp 5136
Scaffold N50 6445
Scaffold L50 (Mbp) 0.00
# of gaps 2906
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 0.02, 0.02, 0.02


Gene Models ExternalModels
length (bp) of: average median
gene 956 698
transcript 852 615
exon 635 435
intron 306 256
description:
protein length (aa) 284 205
exons per gene 1.34 1
# of gene models 10327


Genome Reference(s)

Funding

This project was not sequenced at the JGI.