Info • Neopyropia yezoensis U-51

Status

The Neopyropia yezoensis U-51 genome sequence and gene models have not been determined by the JGI, but were downloaded from Nakamura et al. 2013 on September 19, 2019.  In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 1729 models and the generation of the FilteredModels1 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 43.48
Sequencing read coverage depth
# of contigs 49540
# of scaffolds 46634
# of scaffolds >= 2Kbp 5136
Scaffold N50 6445
Scaffold L50 (Mbp) 0.00
# of gaps 2906
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 0.02, 0.02, 0.02


Gene Models FilteredModels1
length (bp) of: average median
gene 1017 765
transcript 908 668
exon 666 459
intron 303 255
description:
protein length (aa) 302 222
exons per gene 1.36 1
# of gene models 8598


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.