Info • Raphidocelis subcapitata NIES-35


The genome sequence and gene models of Raphidocelis subcapitata NIES-35 have not been determined by the JGI, but were downloaded from NCBI, on November 14, 2019. In order to allow comparative analyses with other genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into PhycoCosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Raphidocelis subcapitata NIES-35 release are below.
Genome Assembly
Genome Assembly size (Mbp) 51.16
Sequencing read coverage depth 80x
# of contigs 1480
# of scaffolds 300
# of scaffolds >= 2Kbp 300
Scaffold N50 46
Scaffold L50 (Mbp) 0.34
# of gaps 1180
% of scaffold length in gaps 2.2%
Three largest Scaffolds (Mbp) 1.44, 1.07, 1.03

Gene Models ExternalModels
length (bp) of: average median
gene 2980 2360
transcript 1684 1335
exon 252 141
intron 230 205
protein length (aa) 561 445
exons per gene 6.69 5
# of gene models 13383

Genome Reference(s)


This project was not sequenced at the JGI.