Info • Reticulomyxa filosa


The nuclear genome assembly and structural annotation of Reticulomyxa filosa were not determined by the JGI, but were downloaded from NCBI, on May 29, 2018. In order to allow comparative analyses with other genomes sequenced by the Joint Genome Institute, a copy of this genome was incorporated into the JGI Genome Portal, and de novo functional annotations of the proteins were generated by the JGI Annotation Pipeline. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Reticulomyxa filosa v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 101.87
Sequencing read coverage depth 70x
# of contigs 50809
# of scaffolds 50809
# of scaffolds >= 2Kbp 14351
Scaffold N50 7416
Scaffold L50 (Mbp) 0.00
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.05, 0.04, 0.04

Gene Models ExternalModels
length (bp) of: average median
gene 1085 868
transcript 956 750
exon 379 281
intron 87 80
protein length (aa) 319 250
exons per gene 2.52 2
# of gene models 39963

Genome Reference(s)


This project was not sequenced at the JGI.