Status
Assembly v1 (Sep 2014) is a minimal draft assembly of Illumina gDNA reads. These were assembled using serially Velvet and AllPathsLG.
Annotation v1 (Oct 2014) is a standard draft annotation using the JGI Annotation Pipeline.
Summary statistics for the Rhizopogon salebrosus TDB-379
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 82.29 |
| Sequencing read coverage depth | 120.8x |
| # of contigs | 5710 |
| # of scaffolds | 1976 |
| # of scaffolds >= 2Kbp | 1629 |
| Scaffold N50 | 240 |
| Scaffold L50 (Mbp) | 0.11 |
| # of gaps | 3734 |
| % of scaffold length in gaps | 47.9% |
| Three largest Scaffolds (Mbp) | 0.66, 0.56, 0.47 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 83186 | 75734 | 91.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1387 | 1087 |
| transcript | 1132 | 874 |
| exon | 227 | 145 |
| intron | 66 | 55 |
| description: | ||
| protein length (aa) | 322 | 235 |
| exons per gene | 4.99 | 4 |
| # of gene models | 18900 |
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
