Info • Rhizina undulata CBS 300.56 v1.0

Status

[April 2019] The Rhizina undulata CBS 300.56 genome was sequenced with Illumina, assembled with SPAdes
v3.12.0, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Rhizina undulata CBS 300.56 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 85.63
Sequencing read coverage depth 91.3973321671x
# of contigs 8927
# of scaffolds 8768
# of scaffolds >= 2Kbp 6954
Scaffold N50 1334
Scaffold L50 (Mbp) 0.02
# of gaps 159
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.17, 0.14, 0.10


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45807 43293 94.5%
Ests est.fasta 127908209 127094150 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1601 1356
transcript 1339 1096
exon 365 224
intron 100 74
description:
protein length (aa) 377 296
exons per gene 3.67 3
# of gene models 12464


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.