Status
[April 2019] The Rhizina
undulata CBS 300.56 genome was sequenced with
Illumina, assembled with SPAdes
v3.12.0, and annotated with the
JGI Annotation Pipeline. Mitochondrial genome was assembled
separately and is available on the Download page.
Summary statistics for the Rhizina undulata CBS 300.56
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 85.63 |
| Sequencing read coverage depth | 91.3973321671x |
| # of contigs | 8927 |
| # of scaffolds | 8768 |
| # of scaffolds >= 2Kbp | 6954 |
| Scaffold N50 | 1334 |
| Scaffold L50 (Mbp) | 0.02 |
| # of gaps | 159 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.17, 0.14, 0.10 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 45807 | 43293 | 94.5% |
| Ests | est.fasta | 127908209 | 127094150 | 99.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1601 | 1356 |
| transcript | 1339 | 1096 |
| exon | 365 | 224 |
| intron | 100 | 74 |
| description: | ||
| protein length (aa) | 377 | 296 |
| exons per gene | 3.67 | 3 |
| # of gene models | 12464 |
Collaborators
Links
- 1000 Fungal Genomes Project
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Pezizomycetes
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
