Info • Rhodotorula sp. CCFEE 5036

Status

The Rhodotorula sp. CCFEE 5036 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Apr 17, 2021. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 19.07
Sequencing read coverage depth 192.0x
# of contigs 200
# of scaffolds 155
# of scaffolds >= 2Kbp 121
Scaffold N50 19
Scaffold L50 (Mbp) 0.34
# of gaps 45
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.93, 0.69, 0.66


Gene Models ExternalModels
length (bp) of: average median
gene 2290 1889
transcript 1743 1407
exon 259 144
intron 98 75
description:
protein length (aa) 581 469
exons per gene 6.73 6
# of gene models 6434


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Coleine C, Masonjones S, Onofri S, Selbmann L, Stajich JE
Draft Genome Sequence of the Yeast Rhodotorula sp. Strain CCFEE 5036, Isolated from McMurdo Dry Valleys, Antarctica.
Microbiol Resour Announc. 2020 Apr 2;9(14):. doi: 10.1128/MRA.00020-20

Links

Funding

This project was not sequenced at the JGI.