Status
The Rhodosporidium diobovatum 08-225 genome was not sequenced at JGI, but was provided by Irene Fakankun on Feb 5, 2018 and then annotated using the JGI Annotation Pipeline.
Summary statistics for the Rhodosporidium diobovatum
08-225 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 21.14 |
| Sequencing read coverage depth | 1.0x |
| # of contigs | 614 |
| # of scaffolds | 361 |
| # of scaffolds >= 2Kbp | 336 |
| Scaffold N50 | 55 |
| Scaffold L50 (Mbp) | 0.12 |
| # of gaps | 253 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 0.56, 0.49, 0.41 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | est.fasta | 642128330 | 631448451 | 98.3% |
| Ests | Illumina_ESTs | 58842 | 42890 | 72.9% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 2176 | 1868 |
| transcript | 1738 | 1458 |
| exon | 292 | 172 |
| intron | 90 | 76 |
| description: | ||
| protein length (aa) | 510 | 412 |
| exons per gene | 5.95 | 5 |
| # of gene models | 7974 |
Collaborators
Irene Fakankun, U. of Manitoba, Canada
Dr. Brian Fristensky, U. of Manitoba, Canada
Dr. David Levin, U. of Manitoba, Canada
Funding
This project was not sequenced at the JGI.
