Info • Rhodosporidium glutinis ATCC 204091 v1.0

Status

[June 2019] The Rhodosporidium glutinis ATCC 204091 was not sequenced or assembled at the DOE Joint Genome Institute. Instead, it was downloaded from NCBI on 6/3/2019. Gene models and functional predictions were then generated using the JGI annotation pipeline. Note: scaffold_27 was determined to be of likely mitochondrial origin and therefore all models that were predicted were removed from the GeneCatalog. However, models from this scaffold are still present in downloadable content and should be removed if not desired.

Summary statistics for the Rhodosporidium glutinis ATCC 204091 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.48
Sequencing read coverage depth 1.0x
# of contigs 167
# of scaffolds 29
# of scaffolds >= 2Kbp 29
Scaffold N50 7
Scaffold L50 (Mbp) 1.20
# of gaps 138
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 2.20, 1.66, 1.55


Gene Models FilteredModels1
length (bp) of: average median
gene 2114 1747
transcript 1644 1329
exon 248 148
intron 86 64
description:
protein length (aa) 548 443
exons per gene 6.62 6
# of gene models 7374


Collaborators

Michael Betenbaugh, Johns Hopkins University, Maryland, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Paul D, Magbanua Z, Arick M 2nd, French T, Bridges SM, Burgess SC, Lawrence ML
Genome Sequence of the Oleaginous Yeast Rhodotorula glutinis ATCC 204091.
Genome Announc. 2014 Feb 13;2(1):. doi: 10.1128/genomeA.00046-14

Funding

This project was not sequenced at the JGI.