Info • Rhodotorula taiwanensis MD1149

Status

The genome sequence and gene models of Rhodotorula taiwanensis MD1149 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Summary statistics for the Rhodotorula taiwanensis MD1149 are below.
Genome Assembly
Genome Assembly size (Mbp) 19.57
Sequencing read coverage depth 229x
# of contigs 214
# of scaffolds 180
# of scaffolds >= 2Kbp 157
Scaffold N50 17
Scaffold L50 (Mbp) 0.39
# of gaps 34
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.95, 0.90, 0.80


Gene Models ExternalModels
length (bp) of: average median
gene 2308 1978
transcript 1893 1584
exon 307 177
intron 82 71
description:
protein length (aa) 550 457
exons per gene 6.16 5
# of gene models 7014


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Tkavc R, Matrosova VY, Grichenko OE, Gostinčar C, Volpe RP, Klimenkova P, Gaidamakova EK, Zhou CE, Stewart BJ, Lyman MG, Malfatti SA, Rubinfeld B, Courtot M, Singh J, Dalgard CL, Hamilton T, Frey KG, Gunde-Cimerman N, Dugan L, Daly MJ
Prospects for Fungal Bioremediation of Acidic Radioactive Waste Sites: Characterization and Genome Sequence of Rhodotorula taiwanensis MD1149.
Front Microbiol. 2017;8():2528. doi: 10.3389/fmicb.2017.02528

Links

Funding

This project was not sequenced at the JGI.