Info • Rhynchosporium agropyri 04CH RACA61

Status

The genome sequence and gene models of Rhynchosporium agropyri 04CH RACA61 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Summary statistics for the Rhynchosporium agropyri 04CH RACA61 are below.
Genome Assembly
Genome Assembly size (Mbp) 52.48
Sequencing read coverage depth 820x
# of contigs 1528
# of scaffolds 508
# of scaffolds >= 2Kbp 437
Scaffold N50 54
Scaffold L50 (Mbp) 0.30
# of gaps 1020
% of scaffold length in gaps 1.6%
Three largest Scaffolds (Mbp) 1.17, 1.08, 1.03


Gene Models ExternalModels
length (bp) of: average median
gene 1440 1188
transcript 1269 1026
exon 416 220
intron 85 59
description:
protein length (aa) 423 342
exons per gene 3.05 3
# of gene models 13673


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Penselin D, Münsterkötter M, Kirsten S, Felder M, Taudien S, Platzer M, Ashelford K, Paskiewicz KH, Harrison RJ, Hughes DJ, Wolf T, Shelest E, Graap J, Hoffmann J, Wenzel C, Wöltje N, King KM, Fitt BD, Güldener U, Avrova A, Knogge W
Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses.
BMC Genomics. 2016 Nov 22;17(1):953. doi: 10.1186/s12864-016-3299-5

Funding

This project was not sequenced at the JGI.