Info • Rhytidhysteron rufulum

Status

The genome of Rhytidhysteron rufulum was not sequenced by the JGI but by the Oregon State University. For more information, contact Prof. Dr. Joseph Spatafora. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Rhytidhysteron rufulum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.18
Sequencing read coverage depth
# of contigs 4455
# of scaffolds 3308
# of scaffolds >= 2Kbp 1976
Scaffold N50 353
Scaffold L50 (Mbp) 0.03
# of gaps 1147
% of scaffold length in gaps 0.6%
Three largest Scaffolds (Mbp) 0.19, 0.18, 0.15


Gene Models ExternalModels
length (bp) of: average median
gene 1700 1396
transcript 1508 1242
exon 477 268
intron 90 59
description:
protein length (aa) 503 414
exons per gene 3.16 3
# of gene models 12117


Collaborators

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, Hesse CN, Kosti I, LaButti K, Lindquist EA, Lucas S, Salamov AA, Bradshaw RE, Ciuffetti L, Hamelin RC, Kema GH, Lawrence C, Scott JA, Spatafora JW, Turgeon BG, de Wit PJ, Zhong S, Goodwin SB, Grigoriev IV
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi.
PLoS Pathog. 2012;8(12):e1003037. doi: 10.1371/journal.ppat.1003037

Funding

This project was not sequenced at the JGI.