Info • Rigidoporus microporus ED310 v1.0

Status

[March 2017] The Rigidoporus microporus ED310 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Rigidoporus microporus ED310 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.09
Sequencing read coverage depth 80.32x
# of contigs 283
# of scaffolds 283
# of scaffolds >= 2Kbp 281
Scaffold N50 12
Scaffold L50 (Mbp) 1.08
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.49, 2.42, 2.19


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 125428592 119040034 94.9%
Other UH_RNA_contigs 34441 33137 96.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1868 1589
transcript 1467 1236
exon 222 139
intron 74 60
description:
protein length (aa) 436 353
exons per gene 6.60 5
# of gene models 10917


Collaborators

Fred Asiegbu, Department of Forest Sciences, University of Helsinki

Francis Martin, INRA Nancy, France

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Oghenekaro AO, Kovalchuk A, Raffaello T, Camarero S, Gressler M, Henrissat B, Lee J, Liu M, Martínez AT, Miettinen O, Mihaltcheva S, Pangilinan J, Ren F, Riley R, Ruiz-Dueñas FJ, Serrano A, Thon MR, Wen Z, Zeng Z, Barry K, Grigoriev IV, Martin F, Asiegbu FO
Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions.
Sci Rep. 2020 Mar 23;10(1):5250. doi: 10.1038/s41598-020-62150-4

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.