Info • Rosellinia corticium 1501 v1.0

Status

[September 2020] The Rosellinia corticium 1501 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Rosellinia corticium 1501 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 41.55
Sequencing read coverage depth 144.99x
# of contigs 77
# of scaffolds 63
# of scaffolds >= 2Kbp 63
Scaffold N50 12
Scaffold L50 (Mbp) 1.22
# of gaps 14
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.31, 2.16, 2.09


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 40510 38692 95.5%
Ests est.fasta 161039591 160006145 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 2069 1841
transcript 1869 1647
exon 618 389
intron 101 73
description:
protein length (aa) 486 406
exons per gene 3.02 3
# of gene models 10472


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.