Info • Rostrohypoxylon terebratum CBS 119137 v1.0

Status

[August 2019] The Rostrohypoxylon terebratum CBS 119137 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Rostrohypoxylon terebratum CBS 119137 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.28
Sequencing read coverage depth 137.172927716x
# of contigs 422
# of scaffolds 407
# of scaffolds >= 2Kbp 355
Scaffold N50 38
Scaffold L50 (Mbp) 0.27
# of gaps 15
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.46, 1.19, 1.01


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 55479 53712 96.8%
Ests est.fasta 208806471 205851139 98.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 2040 1820
transcript 1869 1653
exon 632 399
intron 90 66
description:
protein length (aa) 486 410
exons per gene 2.96 3
# of gene models 11168


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.