Info • Saccharomycopsis capsularis NRRL Y-17639

Status

The genome of Saccharomycopsis capsularis NRRL Y-17639 was sequenced using Illumina HiSeq 2500 and assembled using DISCOVAR v. 51885, SPAdes v. 3.5.1, and MASURCA v. 3. Please note that this copy of the genome is not maintained by Antonis Rokas or the publication authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Saccharomycopsis capsularis NRRL Y-17639 release are below.
Genome Assembly
Genome Assembly size (Mbp) 17.82
Sequencing read coverage depth 81x
# of contigs 1364
# of scaffolds 1346
# of scaffolds >= 2Kbp 171
Scaffold N50 20
Scaffold L50 (Mbp) 0.29
# of gaps 18
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.77, 0.75, 0.67


Gene Models ExternalModels
length (bp) of: average median
gene 1648 1318
transcript 1510 1225
exon 1139 838
intron 422 166
description:
protein length (aa) 503 408
exons per gene 1.33 1
# of gene models 6736


Collaborators

Kenneth H Wolfe, University College Dublin, Ireland.

Antonis Rokas, Vanderbilt University, U.S.A.

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Krassowski T, Coughlan AY, Shen XX, Zhou X, Kominek J, Opulente DA, Riley R, Grigoriev IV, Maheshwari N, Shields DC, Kurtzman CP, Hittinger CT, Rokas A, Wolfe KH
Evolutionary instability of CUG-Leu in the genetic code of budding yeasts.
Nat Commun. 2018 May 14;9(1):1887. doi: 10.1038/s41467-018-04374-7

Funding

This project was not sequenced at the JGI.