Info • Sargassum fusiforme

Status

The Sargassum fusiforme genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from figshare on February 01, 2024. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 17035 models and the generation of the FilteredModels1 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by its authors and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 394.43
Sequencing read coverage depth
# of contigs 6750
# of scaffolds 6750
# of scaffolds >= 2Kbp 6730
Scaffold N50 775
Scaffold L50 (Mbp) 0.14
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.93, 0.87, 0.86


Gene Models FilteredModels1
length (bp) of: average median
gene 5892 4254
transcript 1426 1056
exon 200 139
intron 731 388
description:
protein length (aa) 475 352
exons per gene 7.12 6
# of gene models 17495


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.