Status
[August 2021] The Scheffersomyces virginianus NRRL Y-48822T v1.1 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section. In contrast to the v1.0 portal, this annotation has been improved through use of new RNAseq data.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 17.75 |
| Sequencing read coverage depth | 616.35x |
| # of contigs | 16 |
| # of scaffolds | 16 |
| # of scaffolds >= 2Kbp | 16 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 2.18 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 3.22, 2.35, 2.20 |
Please note RNA data suffers from contamination. Unmapped RNA reads
are hitting organisms in the target order.
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 35410 | 18005 | 50.8% |
| Ests | est.fasta | 144388303 | 142366245 | 98.6% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1818 | 1583 |
| transcript | 1782 | 1558 |
| exon | 1484 | 1320 |
| intron | 183 | 92 |
| description: | ||
| protein length (aa) | 499 | 418 |
| exons per gene | 1.20 | 1 |
| # of gene models | 6352 |
Collaborators
- Chris Hittinger, U. of Wisconsin-Madison, WI
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Debaryomycetaceae
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
