Status
Assembly v1 (January 2015) is a minimal draft assembly, using Illumina gDNAs assembled successively with Velvet and AllPathsLG.
Summary statistics for the Sebacina vermifera ssp.
bescii v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 36.85 |
| Sequencing read coverage depth | 251.1x |
| # of contigs | 1685 |
| # of scaffolds | 827 |
| # of scaffolds >= 2Kbp | 627 |
| Scaffold N50 | 48 |
| Scaffold L50 (Mbp) | 0.20 |
| # of gaps | 858 |
| % of scaffold length in gaps | 2.7% |
| Three largest Scaffolds (Mbp) | 1.11, 1.09, 0.83 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 56784 | 49880 | 87.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1806 | 1534 |
| transcript | 1517 | 1290 |
| exon | 284 | 163 |
| intron | 68 | 55 |
| description: | ||
| protein length (aa) | 442 | 357 |
| exons per gene | 5.34 | 4 |
| # of gene models | 14208 |
Collaborators
- DOE Joint Genome Institute
- Kelly Craven at The Samuel Roberts Noble Foundation
- Yuhong Tang at The Samuel Roberts Noble Foundation
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
