Info • Seminavis robusta D6

Status

The Seminavis robusta D6 genome sequence and gene models have not been determined by the JGI, but were downloaded from the Online Resource for Community Annotation of Eukaryotes (ORCAE) web portal on August 5, 2020. Please note that this copy of the genome is not maintained by ORCAE and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Seminavis robusta D6 release are below.
Genome Assembly
Genome Assembly size (Mbp) 125.57
Sequencing read coverage depth
# of contigs 4756
# of scaffolds 4752
# of scaffolds >= 2Kbp 4351
Scaffold N50 736
Scaffold L50 (Mbp) 0.05
# of gaps 4
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.32, 0.29, 0.28


Gene Models ExternalModels
length (bp) of: average median
gene 1782 1405
transcript 1677 1333
exon 860 605
intron 112 95
description:
protein length (aa) 479 378
exons per gene 1.95 1
# of gene models 37455


Genome Reference(s)

Funding

This project was not sequenced at the JGI.