Status
[October 2022] The Simplicillium lamellicola cont 1231369 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Fungal Annotation Pipeline. The mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 28.78 |
| Sequencing read coverage depth | 25.22x |
| # of contigs | 15 |
| # of scaffolds | 15 |
| # of scaffolds >= 2Kbp | 15 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 4.43 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 5.57, 4.74, 4.43 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1649 | 1366 |
| transcript | 1518 | 1260 |
| exon | 562 | 298 |
| intron | 79 | 60 |
| description: | ||
| protein length (aa) | 506 | 420 |
| exons per gene | 2.70 | 2 |
| # of gene models | 10636 |
Collaborators
- Otto Miettinen, University of Helsinki, Finland
- Francis M. Martin, INRAE, France
Links
- 1000 Fungal Genomes Project
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales
- JGI EcoGroup Portal: Mycoparasitic Fungi
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
