Status
The genome sequence and gene models of Sordaria macrospora k-hell were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
Summary statistics for the Sordaria macrospora k-hell are
below.
Genome Assembly | |
Genome Assembly size (Mbp) | 38.30 |
Sequencing read coverage depth | 95x |
# of contigs | 2439 |
# of scaffolds | 1582 |
# of scaffolds >= 2Kbp | 249 |
Scaffold N50 | 14 |
Scaffold L50 (Mbp) | 0.75 |
# of gaps | 857 |
% of scaffold length in gaps | 0.4% |
Three largest Scaffolds (Mbp) | 3.26, 2.25, 1.73 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 2062 | 1784 |
transcript | 1884 | 1618 |
exon | 728 | 457 |
intron | 114 | 75 |
description: | ||
protein length (aa) | 509 | 419 |
exons per gene | 2.59 | 2 |
# of gene models | 9856 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Nowrousian M, Stajich JE, Chu M, Engh I, Espagne E, Halliday K, Kamerewerd J, Kempken F, Knab B, Kuo HC, Osiewacz HD, Pöggeler S, Read ND, Seiler S, Smith KM, Zickler D, Kück U, Freitag M
De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis.
PLoS Genet. 2010 Apr 8;6(4):e1000891. doi: 10.1371/journal.pgen.1000891
Nowrousian M, Stajich JE, Chu M, Engh I, Espagne E, Halliday K, Kamerewerd J, Kempken F, Knab B, Kuo HC, Osiewacz HD, Pöggeler S, Read ND, Seiler S, Smith KM, Zickler D, Kück U, Freitag M
De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis.
PLoS Genet. 2010 Apr 8;6(4):e1000891. doi: 10.1371/journal.pgen.1000891
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Sordariomycetidae Sordariales Sordariaceae
Funding
This project was not sequenced at the JGI.