Status
The genome of Spathularia flavida was not sequenced by the JGI but by the Oregon State University within the AFTOL project. For more information, contact Prof. Dr. Joey Spatafora ([email protected]). JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Spathularia flavida genome v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 35.54 |
| Sequencing read coverage depth | 125.38x |
| # of contigs | 5460 |
| # of scaffolds | 2195 |
| # of scaffolds >= 2Kbp | 1093 |
| Scaffold N50 | 180 |
| Scaffold L50 (Mbp) | 0.06 |
| # of gaps | 3265 |
| % of scaffold length in gaps | 1.4% |
| Three largest Scaffolds (Mbp) | 0.32, 0.30, 0.23 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1932 | 1567 |
| transcript | 1644 | 1341 |
| exon | 472 | 247 |
| intron | 118 | 64 |
| description: | ||
| protein length (aa) | 548 | 447 |
| exons per gene | 3.48 | 3 |
| # of gene models | 9941 |
Collaborators
PI: Joey Spatafora, Oregon State University
Funding
This project was not sequenced at the JGI.
