Status
[December 2020] The Spathaspora suhii UFMG-HMD-16.2 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
Summary statistics for the Spathaspora suhii UFMG-HMD-16.2
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 12.76 |
| Sequencing read coverage depth | 312.62x |
| # of contigs | 25 |
| # of scaffolds | 25 |
| # of scaffolds >= 2Kbp | 24 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 1.99 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.51, 2.31, 1.99 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1488 | 1240 |
| transcript | 1461 | 1215 |
| exon | 1117 | 933 |
| intron | 91 | 55 |
| description: | ||
| protein length (aa) | 487 | 405 |
| exons per gene | 1.31 | 1 |
| # of gene models | 5679 |
Collaborators
- Chris Hittinger, U. of Wisconsin-Madison, WI
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetales Debaryomycetaceae
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
