Info • Spirogloea muscicola CCAC 0214


The Spirogloea muscicola CCAC 0214 genome assembly and gene models have not been determined by the JGI, but were downloaded from the Cheng et al., 2019 genome supplemental data share at on November 21, 2019. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by the JGI and is therefore not automatically updated.

Genome Assembly
Genome Assembly size (Mbp) 171.14
Sequencing read coverage depth 354x
# of contigs 28742
# of scaffolds 19678
# of scaffolds >= 2Kbp 1735
Scaffold N50 94
Scaffold L50 (Mbp) 0.57
# of gaps 9064
% of scaffold length in gaps 8.2%
Three largest Scaffolds (Mbp) 2.32, 2.24, 1.80

Gene Models ExternalModels
length (bp) of: average median
gene 3351 2667
transcript 1360 1059
exon 174 126
intron 242 193
protein length (aa) 453 353
exons per gene 7.81 6
# of gene models 27137

Genome Reference(s)


This project was not sequenced at the JGI.