Status
(Dec 2014) The Stanjemonium grisellum CBS 655.79 genome was sequenced using Illumina and assembled using AllPathsLG.
Summary statistics for the Stanjemonium grisellum CBS
655.79 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 33.00 |
| Sequencing read coverage depth | 103 |
| # of contigs | 831 |
| # of scaffolds | 151 |
| # of scaffolds >= 2Kbp | 132 |
| Scaffold N50 | 10 |
| Scaffold L50 (Mbp) | 1.26 |
| # of gaps | 680 |
| % of scaffold length in gaps | 3.4% |
| Three largest Scaffolds (Mbp) | 2.47, 2.43, 2.08 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 28845 | 27904 | 96.7% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1725 | 1461 |
| transcript | 1600 | 1344 |
| exon | 638 | 385 |
| intron | 85 | 59 |
| description: | ||
| protein length (aa) | 453 | 361 |
| exons per gene | 2.51 | 2 |
| # of gene models | 11832 |
Collaborators
Kathryn Bushley, University of Minnesota
Derek Johnson, Oregon State University
Joey Spatafora, Oregon State University
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
