Status
The genome sequence and gene prediction of Stemphylium lycopersici CIDEFI 216 have not been determined by the JGI, but were downloaded from NCBI on June 1, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Assembly Method :: SOAPdenovo v. SOAPdenovo2
Sequencing Technology :: Illumina HiSeq
Summary statistics for the Stemphylium lycopersici release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 35.17 |
| Sequencing read coverage depth | 77.39x |
| # of contigs | 1322 |
| # of scaffolds | 414 |
| # of scaffolds >= 2Kbp | 331 |
| Scaffold N50 | 21 |
| Scaffold L50 (Mbp) | 0.50 |
| # of gaps | 908 |
| % of scaffold length in gaps | 0.2% |
| Three largest Scaffolds (Mbp) | 1.57, 1.55, 1.22 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 2118 | 1611 |
| transcript | 1798 | 1431 |
| exon | 553 | 308 |
| intron | 144 | 61 |
| description: | ||
| protein length (aa) | 599 | 477 |
| exons per gene | 3.25 | 3 |
| # of gene models | 8997 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Franco ME, López S, Medina R, Saparrat MC, Balatti P
Draft Genome Sequence and Gene Annotation of Stemphylium lycopersici Strain CIDEFI-216.
Genome Announc. 2015 Sep 24;3(5):. doi: 10.1128/genomeA.01069-15
Franco ME, López S, Medina R, Saparrat MC, Balatti P
Draft Genome Sequence and Gene Annotation of Stemphylium lycopersici Strain CIDEFI-216.
Genome Announc. 2015 Sep 24;3(5):. doi: 10.1128/genomeA.01069-15
Funding
This project was not sequenced at the JGI.
