Status
[April 2015] The Sympodiomyces attinorum genome was
sequenced using the Illumina platform and assembled with AllPathsLG
release version R49403 (Gnerre
et al., 2010).
A 20.8kb mitochondrial genome was assembled separately and is
available in the download section.
Summary statistics for the Sympodiomyces attinorum NRRL
Y-27639 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 14.02 |
| Sequencing read coverage depth | 89.3x |
| # of contigs | 66 |
| # of scaffolds | 14 |
| # of scaffolds >= 2Kbp | 10 |
| Scaffold N50 | 2 |
| Scaffold L50 (Mbp) | 3.66 |
| # of gaps | 52 |
| % of scaffold length in gaps | 0.3% |
| Three largest Scaffolds (Mbp) | 3.72, 3.66, 2.91 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | RNNotator assembled Illumina ESTs | 13627 | 11081 | 81.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1502 | 1280 |
| transcript | 1449 | 1239 |
| exon | 974 | 780 |
| intron | 109 | 68 |
| description: | ||
| protein length (aa) | 451 | 379 |
| exons per gene | 1.49 | 1 |
| # of gene models | 6184 |
Collaborators
Joseph
Spatafora, Oregon State University, USA
Jon
Magnuson, JBEI, USA
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
