Status
The genome sequence and gene models of Symbiodinium microadriaticum were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on May 25, 2018. In order to allow comparative analyses with other genomes sequenced by the JGI, a copy of this genome is incorporated into the JGI Genome Portal. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Symbiodinium microadriaticum
CCMP2467 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 808.23 |
| Sequencing read coverage depth | 170x |
| # of contigs | 41381 |
| # of scaffolds | 9688 |
| # of scaffolds >= 2Kbp | 5182 |
| Scaffold N50 | 420 |
| Scaffold L50 (Mbp) | 0.57 |
| # of gaps | 31693 |
| % of scaffold length in gaps | 7.7% |
| Three largest Scaffolds (Mbp) | 3.14, 2.74, 2.50 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 12166 | 6903 |
| transcript | 2257 | 1485 |
| exon | 111 | 51 |
| intron | 513 | 237 |
| description: | ||
| protein length (aa) | 748 | 489 |
| exons per gene | 20.37 | 12 |
| # of gene models | 43403 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Aranda M, Li Y, Liew YJ, Baumgarten S, Simakov O, Wilson MC, Piel J, Ashoor H, Bougouffa S, Bajic VB, Ryu T, Ravasi T, Bayer T, Micklem G, Kim H, Bhak J, LaJeunesse TC, Voolstra CR
Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle.
Sci Rep. 2016 Dec 22;6():39734. doi: 10.1038/srep39734
Aranda M, Li Y, Liew YJ, Baumgarten S, Simakov O, Wilson MC, Piel J, Ashoor H, Bougouffa S, Bajic VB, Ryu T, Ravasi T, Bayer T, Micklem G, Kim H, Bhak J, LaJeunesse TC, Voolstra CR
Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle.
Sci Rep. 2016 Dec 22;6():39734. doi: 10.1038/srep39734
Funding
This project was not sequenced at the JGI.
