Info • Symbiodinium microadriaticum CCMP2467


The genome sequence and gene models of Symbiodinium microadriaticum were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on May 25, 2018. In order to allow comparative analyses with other genomes sequenced by the JGI, a copy of this genome is incorporated into the JGI Genome Portal. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Symbiodinium microadriaticum CCMP2467 release are below.
Genome Assembly
Genome Assembly size (Mbp) 808.23
Sequencing read coverage depth 170x
# of contigs 41381
# of scaffolds 9688
# of scaffolds >= 2Kbp 5182
Scaffold N50 420
Scaffold L50 (Mbp) 0.57
# of gaps 31693
% of scaffold length in gaps 7.7%
Three largest Scaffolds (Mbp) 3.14, 2.74, 2.50

Gene Models ExternalModels
length (bp) of: average median
gene 12166 6903
transcript 2257 1485
exon 111 51
intron 513 237
protein length (aa) 748 489
exons per gene 20.37 12
# of gene models 43403

Genome Reference(s)


This project was not sequenced at the JGI.