Status
The genome of Talaromyces marneffei was sequenced by JCVI. For more information on the project please see the JCVI Talaromyces marneffei genome project. JGI MycoCosm tools were setup to assist with manual curation and comparative analysis of Penicillium and Aspergillus fungi.
Summary statistics for the Talaromyces marneffei ATCC
18224 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 28.64 |
| Sequencing read coverage depth | 8.8x |
| # of contigs | 524 |
| # of scaffolds | 452 |
| # of scaffolds >= 2Kbp | 29 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 3.34 |
| # of gaps | 72 |
| % of scaffold length in gaps | 0.6% |
| Three largest Scaffolds (Mbp) | 6.41, 4.17, 3.75 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1920 | 1685 |
| transcript | 1511 | 1260 |
| exon | 478 | 249 |
| intron | 75 | 61 |
| description: | ||
| protein length (aa) | 504 | 420 |
| exons per gene | 3.16 | 3 |
| # of gene models | 10638 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Nierman WC, Fedorova-Abrams ND, Andrianopoulos A
Genome Sequence of the AIDS-Associated Pathogen Penicillium marneffei (ATCC18224) and Its Near Taxonomic Relative Talaromyces stipitatus (ATCC10500).
Genome Announc. 2015 Feb 12;3(1):. doi: 10.1128/genomeA.01559-14
Nierman WC, Fedorova-Abrams ND, Andrianopoulos A
Genome Sequence of the AIDS-Associated Pathogen Penicillium marneffei (ATCC18224) and Its Near Taxonomic Relative Talaromyces stipitatus (ATCC10500).
Genome Announc. 2015 Feb 12;3(1):. doi: 10.1128/genomeA.01559-14
Funding
This project was not sequenced at the JGI.
