Info • Talaromyces proteolyticus PMI_201 v1.0

Status

[November 2016] The Talaromyces proteolyticus PMI_201 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Talaromyces proteolyticus PMI_201 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.61
Sequencing read coverage depth 234.87x
# of contigs 30
# of scaffolds 30
# of scaffolds >= 2Kbp 30
Scaffold N50 6
Scaffold L50 (Mbp) 2.61
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.91, 3.37, 3.16


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 32417 30383 93.7%
Ests est.fasta 76091383 75979932 99.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1735 1523
transcript 1583 1377
exon 493 293
intron 71 60
description:
protein length (aa) 472 400
exons per gene 3.21 3
# of gene models 13587


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.