Status
The Tetrabaena socialis NIES-571 genome sequence and gene models have not been determined by the JGI, but were downloaded from NCBI on October 31, 2019. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Summary statistics for the Tetrabaena socialis NIES-571
release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 135.78 |
Sequencing read coverage depth | |
# of contigs | 19336 |
# of scaffolds | 5856 |
# of scaffolds >= 2Kbp | 2892 |
Scaffold N50 | 263 |
Scaffold L50 (Mbp) | 0.15 |
# of gaps | 13480 |
% of scaffold length in gaps | 27.8% |
Three largest Scaffolds (Mbp) | 0.70, 0.66, 0.66 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 4229 | 2708 |
transcript | 1294 | 932 |
exon | 227 | 134 |
intron | 628 | 323 |
description: | ||
protein length (aa) | 406 | 273 |
exons per gene | 5.69 | 4 |
# of gene models | 14296 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Featherston J, Arakaki Y, Hanschen ER, Ferris PJ, Michod RE, Olson BJSC, Nozaki H, Durand PM
The 4-Celled Tetrabaena socialis Nuclear Genome Reveals the Essential Components for Genetic Control of Cell Number at the Origin of Multicellularity in the Volvocine Lineage.
Mol Biol Evol. 2018 Apr 1;35(4):855-870. doi: 10.1093/molbev/msx332
Featherston J, Arakaki Y, Hanschen ER, Ferris PJ, Michod RE, Olson BJSC, Nozaki H, Durand PM
The 4-Celled Tetrabaena socialis Nuclear Genome Reveals the Essential Components for Genetic Control of Cell Number at the Origin of Multicellularity in the Volvocine Lineage.
Mol Biol Evol. 2018 Apr 1;35(4):855-870. doi: 10.1093/molbev/msx332
Links
- JGI Algae EcoGroup Portal
- JGI PhyloGroup Portals: Archaeplastida Viridiplantae Chlorophyta Chlorophyceae
Funding
This project was not sequenced at the JGI.