Info • Tetrabaena socialis NIES-571


The Tetrabaena socialis NIES-571 genome sequence and gene models have not been determined by the JGI, but were downloaded from NCBI on October 31, 2019. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Tetrabaena socialis NIES-571 release are below.
Genome Assembly
Genome Assembly size (Mbp) 135.78
Sequencing read coverage depth
# of contigs 19336
# of scaffolds 5856
# of scaffolds >= 2Kbp 2892
Scaffold N50 263
Scaffold L50 (Mbp) 0.15
# of gaps 13480
% of scaffold length in gaps 27.8%
Three largest Scaffolds (Mbp) 0.70, 0.66, 0.66

Gene Models ExternalModels
length (bp) of: average median
gene 4229 2708
transcript 1294 932
exon 227 134
intron 628 323
protein length (aa) 406 273
exons per gene 5.69 4
# of gene models 14296

Genome Reference(s)


This project was not sequenced at the JGI.