Info • Thalassiosira oceanica CCMP1005


The genome sequence and gene models of Thalassiosira oceanica have not been determined by the JGI, but were downloaded from NCBI, on October 26, 2017. In order to allow comparative analyses with other genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into the JGI Genome Portal. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Thalassiosira oceanica CCMP1005 release are below.
Genome Assembly
Genome Assembly size (Mbp) 92.19
Sequencing read coverage depth 8.7x
# of contigs 50892
# of scaffolds 50892
# of scaffolds >= 2Kbp 12905
Scaffold N50 6760
Scaffold L50 (Mbp) 0.00
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.14, 0.06, 0.04

Gene Models ExternalModels
length (bp) of: average median
gene 1255 921
transcript 1065 780
exon 466 320
intron 150 93
protein length (aa) 355 260
exons per gene 2.29 2
# of gene models 34642

Genome Reference(s)


This project was not sequenced at the JGI.