Status
The genome sequence and gene models of Thermomyces lanuginosus SSBP were not determined by the Joint Genome Institute (JGI), but were provided by the Stajich lab in June, 2016 (also available on NCBI). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.
Summary statistics for the Thermomyces lanuginosus SSBP
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 19.16 |
| Sequencing read coverage depth | 48.0x |
| # of contigs | 311 |
| # of scaffolds | 311 |
| # of scaffolds >= 2Kbp | 303 |
| Scaffold N50 | 53 |
| Scaffold L50 (Mbp) | 0.11 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.48, 0.38, 0.33 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 2412 | 2002 |
| transcript | 2178 | 1813 |
| exon | 599 | 335 |
| intron | 91 | 60 |
| description: | ||
| protein length (aa) | 537 | 444 |
| exons per gene | 3.64 | 3 |
| # of gene models | 6241 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
McHunu NP, Permaul K, Abdul Rahman AY, Saito JA, Singh S, Alam M
Xylanase Superproducer: Genome Sequence of a Compost-Loving Thermophilic Fungus, Thermomyces lanuginosus Strain SSBP.
Genome Announc. 2013 Jun 20;1(3):. doi: 10.1128/genomeA.00388-13
McHunu NP, Permaul K, Abdul Rahman AY, Saito JA, Singh S, Alam M
Xylanase Superproducer: Genome Sequence of a Compost-Loving Thermophilic Fungus, Thermomyces lanuginosus Strain SSBP.
Genome Announc. 2013 Jun 20;1(3):. doi: 10.1128/genomeA.00388-13
Funding
This project was not sequenced at the JGI.
