Status
[May 2024] The Cylindrocarpon sp. B302-11 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 48.71 |
| Sequencing read coverage depth | 142.44x |
| # of contigs | 1186 |
| # of scaffolds | 1129 |
| # of scaffolds >= 2Kbp | 817 |
| Scaffold N50 | 26 |
| Scaffold L50 (Mbp) | 0.46 |
| # of gaps | 57 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 3.18, 1.53, 1.37 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 59217 | 56762 | 95.9% |
| Ests | est.fasta | 234481114 | 231708934 | 98.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1884 | 1618 |
| transcript | 1709 | 1475 |
| exon | 574 | 355 |
| intron | 90 | 60 |
| description: | ||
| protein length (aa) | 492 | 407 |
| exons per gene | 2.98 | 2 |
| # of gene models | 15735 |
Collaborators
- Kathryn Bushley, USDA - Agricultural Research Service.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Hypocreomycetidae Hypocreales Nectriaceae
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
