Status
Assembly v1 (July 2014) is a minimal draft assembly of Illumina gDNA reads. A total of 194 scaffolds and 72.9 Mbp were assembled using first Velvet and then AllPathsLG.
Summary statistics for the Thozetella sp. PMI_491 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 72.86 |
| Sequencing read coverage depth | 112.6x |
| # of contigs | 627 |
| # of scaffolds | 194 |
| # of scaffolds >= 2Kbp | 183 |
| Scaffold N50 | 28 |
| Scaffold L50 (Mbp) | 0.89 |
| # of gaps | 433 |
| % of scaffold length in gaps | 8.5% |
| Three largest Scaffolds (Mbp) | 3.12, 2.04, 1.70 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 51762 | 50198 | 97.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1661 | 1460 |
| transcript | 1487 | 1306 |
| exon | 516 | 325 |
| intron | 95 | 66 |
| description: | ||
| protein length (aa) | 431 | 366 |
| exons per gene | 2.88 | 2 |
| # of gene models | 23281 |
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
