Status
Assembly v1 (April 2013) is a standard draft assembly of Solexa gDNA reads. A total of 289 scaffolds and 18.7 Mbp were assembled using AllPathsLG.
Summary statistics for the Tilletiaria anomala UBC 951
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 18.70 |
| Sequencing read coverage depth | 25.2x |
| # of contigs | 289 |
| # of scaffolds | 289 |
| # of scaffolds >= 2Kbp | 253 |
| Scaffold N50 | 43 |
| Scaffold L50 (Mbp) | 0.13 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.46, 0.46, 0.39 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 16108 | 15307 | 95.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 2027 | 1718 |
| transcript | 1819 | 1501 |
| exon | 547 | 321 |
| intron | 92 | 79 |
| description: | ||
| protein length (aa) | 521 | 407 |
| exons per gene | 3.32 | 3 |
| # of gene models | 6810 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Toome M, Kuo A, Henrissat B, Lipzen A, Tritt A, Yoshinaga Y, Zane M, Barry K, Grigoriev IV, Spatafora JW, Aime MC
Draft Genome Sequence of a Rare Smut Relative, Tilletiaria anomala UBC 951.
Genome Announc. 2014 Jun 12;2(3):. doi: 10.1128/genomeA.00539-14
Toome M, Kuo A, Henrissat B, Lipzen A, Tritt A, Yoshinaga Y, Zane M, Barry K, Grigoriev IV, Spatafora JW, Aime MC
Draft Genome Sequence of a Rare Smut Relative, Tilletiaria anomala UBC 951.
Genome Announc. 2014 Jun 12;2(3):. doi: 10.1128/genomeA.00539-14
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
