Status
[September 2022] The Tilletia maclaganii Tm001 NY21 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 42.79 |
| Sequencing read coverage depth | 143.3x |
| # of contigs | 53 |
| # of scaffolds | 53 |
| # of scaffolds >= 2Kbp | 52 |
| Scaffold N50 | 11 |
| Scaffold L50 (Mbp) | 1.62 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.60, 2.35, 2.31 |
Please note that Tm001_switchgrass_infection library is derived
from infected plant tissue, resulting in the presence of many
non-fungal transcripts.
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | est.fasta | 328347243 | 248151755 | 75.6% |
| Other | Tm001_pure_culture | 28849 | 27277 | 94.6% |
| Other | Tm001_switchgrass_infection | 289512 | 22029 | 7.6% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 2103 | 1762 |
| transcript | 1797 | 1452 |
| exon | 464 | 265 |
| intron | 109 | 84 |
| description: | ||
| protein length (aa) | 521 | 400 |
| exons per gene | 3.87 | 3 |
| # of gene models | 10235 |
Collaborators
- David Lowry, Michigan State University, Michigan
- Gary Bergstrom, Cornell University, New York
Links
- JGI PhyloGroup Portals: Fungi Dikarya Basidiomycota Ustilaginomycotina
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
