Info • Tolypocladium ophioglossoides CBS100239

Status

The genome sequence and gene models of Tolypocladium ophioglossoides CBS100239 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Summary statistics for the Tolypocladium ophioglossoides CBS100239 are below.
Genome Assembly
Genome Assembly size (Mbp) 31.24
Sequencing read coverage depth 74.45x
# of contigs 1039
# of scaffolds 171
# of scaffolds >= 2Kbp 121
Scaffold N50 12
Scaffold L50 (Mbp) 0.67
# of gaps 868
% of scaffold length in gaps 3.2%
Three largest Scaffolds (Mbp) 2.31, 2.10, 2.00


Gene Models ExternalModels
length (bp) of: average median
gene 2006 1657
transcript 1847 1518
exon 648 384
intron 88 62
description:
protein length (aa) 506 411
exons per gene 2.85 2
# of gene models 9317


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Quandt CA, Bushley KE, Spatafora JW
The genome of the truffle-parasite Tolypocladium ophioglossoides and the evolution of antifungal peptaibiotics.
BMC Genomics. 2015 Jul 28;16():553. doi: 10.1186/s12864-015-1777-9

Funding

This project was not sequenced at the JGI.