Info • Trebouxiophyceae sp. bin 3300059473_6682 v1.0


[September 2023] The metagenome, from freshwater lake microbial communities collected in Wisconsin, United States, was sequenced using Illumina NovaSeq and assembled using MetaHipMer. Contigs were binned and high quality eukaryotic bins were identified using EukCC version 2.0. Metagenome bin 3300059473_6682, representing an unknown Trebouxiophyceae sp., was identified as highly complete and therefore annotated using the JGI Annotation Pipeline.

Genome Assembly
Genome Assembly size (Mbp) 18.08
Sequencing read coverage depth NA
# of contigs 1163
# of scaffolds 1163
# of scaffolds >= 2Kbp 1163
Scaffold N50 279
Scaffold L50 (Mbp) 0.02
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.10, 0.07, 0.06

Gene Models FilteredModels1
length (bp) of: average median
gene 1478 1174
transcript 1273 1038
exon 590 346
intron 179 117
protein length (aa) 424 346
exons per gene 2.16 2
# of gene models 8628



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.