Status
The Trebouxia sp. A1-2 genome sequence and gene models have not been determined by the JGI, but were downloaded from NCBI on July 19, 2020. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Summary statistics for the Trebouxia sp. A1-2 release are
below.
Genome Assembly | |
Genome Assembly size (Mbp) | 52.90 |
Sequencing read coverage depth | |
# of contigs | 514 |
# of scaffolds | 217 |
# of scaffolds >= 2Kbp | 217 |
Scaffold N50 | 20 |
Scaffold L50 (Mbp) | 0.85 |
# of gaps | 297 |
% of scaffold length in gaps | 0.6% |
Three largest Scaffolds (Mbp) | 3.18, 1.89, 1.89 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 3687 | 2832 |
transcript | 1236 | 919 |
exon | 182 | 149 |
intron | 425 | 312 |
description: | ||
protein length (aa) | 407 | 300 |
exons per gene | 6.79 | 5 |
# of gene models | 13918 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Greshake Tzovaras B, Segers FHID, Bicker A, Dal Grande F, Otte J, Anvar SY, Hankeln T, Schmitt I, Ebersberger I
What Is in Umbilicaria pustulata? A Metagenomic Approach to Reconstruct the Holo-Genome of a Lichen.
Genome Biol Evol. 2020 Apr 1;12(4):309-324. doi: 10.1093/gbe/evaa049
Greshake Tzovaras B, Segers FHID, Bicker A, Dal Grande F, Otte J, Anvar SY, Hankeln T, Schmitt I, Ebersberger I
What Is in Umbilicaria pustulata? A Metagenomic Approach to Reconstruct the Holo-Genome of a Lichen.
Genome Biol Evol. 2020 Apr 1;12(4):309-324. doi: 10.1093/gbe/evaa049
Links
Funding
This project was not sequenced at the JGI.