Info • Trebouxia sp. A1-2


The Trebouxia sp. A1-2 genome sequence and gene models have not been determined by the JGI, but were downloaded from NCBI on July 19, 2020. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Trebouxia sp. A1-2 release are below.
Genome Assembly
Genome Assembly size (Mbp) 52.90
Sequencing read coverage depth
# of contigs 514
# of scaffolds 217
# of scaffolds >= 2Kbp 217
Scaffold N50 20
Scaffold L50 (Mbp) 0.85
# of gaps 297
% of scaffold length in gaps 0.6%
Three largest Scaffolds (Mbp) 3.18, 1.89, 1.89

Gene Models ExternalModels
length (bp) of: average median
gene 3687 2832
transcript 1236 919
exon 182 149
intron 425 312
protein length (aa) 407 300
exons per gene 6.79 5
# of gene models 13918

Genome Reference(s)


This project was not sequenced at the JGI.