Info • Trebouxiophyceae sp. bin 3300059473_978 v1.0


[September 2023] The metagenome, from freshwater lake microbial communities collected in Wisconsin, United States, was sequenced using Illumina NovaSeq and assembled using MetaHipMer. Contigs were binned and high quality eukaryotic bins were identified using EukCC version 2.0. Metagenome bin 3300059473_978, representing an unknown Trebouxiophyceae sp., was identified as highly complete and therefore annotated using the JGI Annotation Pipeline.

Genome Assembly
Genome Assembly size (Mbp) 16.20
Sequencing read coverage depth NA
# of contigs 775
# of scaffolds 775
# of scaffolds >= 2Kbp 775
Scaffold N50 146
Scaffold L50 (Mbp) 0.03
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.25, 0.13, 0.13

Gene Models FilteredModels1
length (bp) of: average median
gene 1487 1168
transcript 1278 1041
exon 599 348
intron 186 114
protein length (aa) 426 347
exons per gene 2.13 2
# of gene models 7783



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.