Status
The genome sequence and gene prediction of Trichosporon asahii var. asahii CBS 8904 have not been determined by the JGI, but were downloaded from NCBI on June 1, 2017. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. Additionally, this copy of the genome does not include the mitochondrial scaffold.
Assembly Method :: GS De Novo Assembler v. 2.6
Sequencing Technology :: 454; Illumina
Summary statistics for the Trichosporon asahii CBS 8904
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 25.27 |
| Sequencing read coverage depth | 12.4x |
| # of contigs | 410 |
| # of scaffolds | 193 |
| # of scaffolds >= 2Kbp | 193 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 3.22 |
| # of gaps | 217 |
| % of scaffold length in gaps | 1.0% |
| Three largest Scaffolds (Mbp) | 4.35, 3.79, 3.27 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1689 | 1379 |
| transcript | 1480 | 1185 |
| exon | 473 | 245 |
| intron | 100 | 61 |
| description: | ||
| protein length (aa) | 493 | 395 |
| exons per gene | 3.13 | 3 |
| # of gene models | 8507 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Yang RY, Li HT, Zhu H, Zhou GP, Wang M, Wang L
Genome sequence of the Trichosporon asahii environmental strain CBS 8904.
Eukaryot Cell. 2012 Dec;11(12):1586-7. doi: 10.1128/EC.00264-12
Yang RY, Li HT, Zhu H, Zhou GP, Wang M, Wang L
Genome sequence of the Trichosporon asahii environmental strain CBS 8904.
Eukaryot Cell. 2012 Dec;11(12):1586-7. doi: 10.1128/EC.00264-12
Funding
This project was not sequenced at the JGI.
